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Registro Completo |
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
27/08/2022 |
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Data da última atualização: |
27/08/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
TORRES, M. H. R. M.; SOUZA, T. L. P. O. de; MELO, L. C.; PEREIRA, H. S. |
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Afiliação: |
MÁRIO HENRIQUE RODRIGUES MENDES TORRES, UNIVERSIDADE FEDERAL DE GOIÁS; THIAGO LIVIO PESSOA OLIV DE SOUZA, CNPAF; LEONARDO CUNHA MELO, CNPAF; HELTON SANTOS PEREIRA, CNPAF. |
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Título: |
Combining ability for resistance to Fusarium wilt and yield in black bean. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
Pesquisa Agropecuária Brasileira, v. 56, e02591, 2021. |
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ISSN: |
1678-3921 |
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DOI: |
https://doi.org/10.1590/S1678-3921.pab2021.v56.02591 |
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Idioma: |
Inglês |
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Conteúdo: |
The objective of this work was to investigate the genetic control of black bean (Phaseolus vulgaris) and to select parents and segregating populations with high resistance to Fusarium wilt, high yield, and greater 100-seed weight (100SW), using a partial diallel cross. Twenty-five populations were obtained from two groups of parents - the first with five parents resistant to and the second with five parents susceptible to Fusarium wilt. The segregating populations were evaluated in experiments in three years/generations for reaction to Fusarium wilt, yield, and 100SW in an area naturally infested with the pathogen. The diallel analysis showed additive and nonadditive effects in control of the three studied traits, with predominance of additive effects. CNFP 15194, CNFP 15207, and 'BRS Esplendor' are the genotypes with high and negative general combining ability estimates (gi = -0.59, -0.76, and -0.13, respectively), being recommended for use as parents for resistance to Fusarium wilt. Among them, CNFP 15194 also forms populations with a greater 100SW (gi = 0.69). The BRS FP403 cultivar is recommended as a parent to increase yield (gi = 218) and 100SW (gi = 1.46). Six populations were selected to obtain black bean lines that combine resistance to Fusarium wilt, high yield, and high 100SW. |
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Thesagro: |
Controle Genético; Cruzamento Dialélico; Feijão; Fusarium Oxysporum; Melhoramento Genético Vegetal; Phaseolus Vulgaris. |
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Thesaurus Nal: |
Beans; Diallel analysis; Plant breeding; Plant genetics. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1145812/1/pab-2021.pdf
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Marc: |
LEADER 02218naa a2200301 a 4500
001 2145812
005 2022-08-27
008 2021 bl uuuu u00u1 u #d
022 $a1678-3921
024 7 $ahttps://doi.org/10.1590/S1678-3921.pab2021.v56.02591$2DOI
100 1 $aTORRES, M. H. R. M.
245 $aCombining ability for resistance to Fusarium wilt and yield in black bean.$h[electronic resource]
260 $c2021
520 $aThe objective of this work was to investigate the genetic control of black bean (Phaseolus vulgaris) and to select parents and segregating populations with high resistance to Fusarium wilt, high yield, and greater 100-seed weight (100SW), using a partial diallel cross. Twenty-five populations were obtained from two groups of parents - the first with five parents resistant to and the second with five parents susceptible to Fusarium wilt. The segregating populations were evaluated in experiments in three years/generations for reaction to Fusarium wilt, yield, and 100SW in an area naturally infested with the pathogen. The diallel analysis showed additive and nonadditive effects in control of the three studied traits, with predominance of additive effects. CNFP 15194, CNFP 15207, and 'BRS Esplendor' are the genotypes with high and negative general combining ability estimates (gi = -0.59, -0.76, and -0.13, respectively), being recommended for use as parents for resistance to Fusarium wilt. Among them, CNFP 15194 also forms populations with a greater 100SW (gi = 0.69). The BRS FP403 cultivar is recommended as a parent to increase yield (gi = 218) and 100SW (gi = 1.46). Six populations were selected to obtain black bean lines that combine resistance to Fusarium wilt, high yield, and high 100SW.
650 $aBeans
650 $aDiallel analysis
650 $aPlant breeding
650 $aPlant genetics
650 $aControle Genético
650 $aCruzamento Dialélico
650 $aFeijão
650 $aFusarium Oxysporum
650 $aMelhoramento Genético Vegetal
650 $aPhaseolus Vulgaris
700 1 $aSOUZA, T. L. P. O. de
700 1 $aMELO, L. C.
700 1 $aPEREIRA, H. S.
773 $tPesquisa Agropecuária Brasileira$gv. 56, e02591, 2021.
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Registro original: |
Embrapa Arroz e Feijão (CNPAF) |
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Biblioteca |
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Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
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URL |
Voltar
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Registro Completo
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
28/11/2018 |
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Data da última atualização: |
24/01/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
PERIPOLLI, E.; STAFUZZA, N. B.; MUNARI, D. P.; LIMA, A. L. F.; IRGANG, R.; MACHADO, M. A.; PANETTO, J. C. do C.; VENTURA, R. V.; BALDI, F.; SILVA, M. V. G. B. |
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Afiliação: |
ELISA PERIPOLLI, UNESP; NEDENIA BONVINO STAFUZZA, UNESP; DANÍSIO PRADO MUNARI, UNESP / CNPQ; ANDRÉ LUÍS FERREIRA LIMA, UFSC; RENATO IRGANG, UFSC; MARCO ANTONIO MACHADO, CNPGL; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; RICARDO VIEIRA VENTURA, USP / Beef Improvement Opportunities, Canada / University of Guelph, Canada; FERNANDO BALDI, UNESP; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL. |
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Título: |
Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
BMC Genomics, v. 19, n. 34, 2018. |
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Páginas: |
13 p. |
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DOI: |
10.1186/s12864-017-4365-3 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract BACKGROUND: Runs of homozygosity (ROH) are continuous homozygous segments of the DNA sequence. They have been applied to quantify individual autozygosity and used as a potential inbreeding measure in livestock species. The aim of the present study was (i) to investigate genome-wide autozygosity to identify and characterize ROH patterns in Gyr dairy cattle genome; (ii) identify ROH islands for gene content and enrichment in segments shared by more than 50% of the samples, and (iii) compare estimates of molecular inbreeding calculated from ROH (FROH), genomic relationship matrix approach (FGRM) and based on the observed versus expected number of homozygous genotypes (FHOM), and from pedigree-based coefficient (FPED). RESULTS: ROH were identified in all animals, with an average number of 55.12 ± 10.37 segments and a mean length of 3.17 Mb. Short segments (ROH1-2 Mb) were abundant through the genomes, which accounted for 60% of all segments identified, even though the proportion of the genome covered by them was relatively small. The findings obtained in this study suggest that on average 7.01% (175.28 Mb) of the genome of this population is autozygous. Overlapping ROH were evident across the genomes and 14 regions were identified with ROH frequencies exceeding 50% of the whole population. Genes associated with lactation (TRAPPC9), milk yield and composition (IRS2 and ANG), and heat adaptation (HSF1, HSPB1, and HSPE1), were identified. Inbreeding coefficients were estimated through the application of FROH, FGRM, FHOM, and FPED approaches. FPED estimates ranged from 0.00 to 0.327 and FROH from 0.001 to 0.201. Low to moderate correlations were observed between FPED-FROH and FGRM-FROH, with values ranging from -0.11 to 0.51. Low to high correlations were observed between FROH-FHOM and moderate between FPED-FHOM and FGRM-FHOM. Correlations between FROH from different lengths and FPED gradually increased with ROH length. CONCLUSIONS: Genes inside ROH islands suggest a strong selection for dairy traits and enrichment for Gyr cattle environmental adaptation. Furthermore, low FPED-FROH correlations for small segments indicate that FPED estimates are not the most suitable method to capture ancient inbreeding. The existence of a moderate correlation between larger ROH indicates that FROH can be used as an alternative to inbreeding estimates in the absence of pedigree records. MenosAbstract BACKGROUND: Runs of homozygosity (ROH) are continuous homozygous segments of the DNA sequence. They have been applied to quantify individual autozygosity and used as a potential inbreeding measure in livestock species. The aim of the present study was (i) to investigate genome-wide autozygosity to identify and characterize ROH patterns in Gyr dairy cattle genome; (ii) identify ROH islands for gene content and enrichment in segments shared by more than 50% of the samples, and (iii) compare estimates of molecular inbreeding calculated from ROH (FROH), genomic relationship matrix approach (FGRM) and based on the observed versus expected number of homozygous genotypes (FHOM), and from pedigree-based coefficient (FPED). RESULTS: ROH were identified in all animals, with an average number of 55.12 ± 10.37 segments and a mean length of 3.17 Mb. Short segments (ROH1-2 Mb) were abundant through the genomes, which accounted for 60% of all segments identified, even though the proportion of the genome covered by them was relatively small. The findings obtained in this study suggest that on average 7.01% (175.28 Mb) of the genome of this population is autozygous. Overlapping ROH were evident across the genomes and 14 regions were identified with ROH frequencies exceeding 50% of the whole population. Genes associated with lactation (TRAPPC9), milk yield and composition (IRS2 and ANG), and heat adaptation (HSF1, HSPB1, and HSPE1), were identified. Inbreeding coefficient... Mostrar Tudo |
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Palavras-Chave: |
Dairy traits; Inbreeding coefficients; ROH islands. |
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Thesagro: |
Bos Indicus. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/187250/1/Cnpgl-2018-BMC-Gen-Machado-Assessment.pdf
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Marc: |
LEADER 03293naa a2200301 a 4500
001 2100275
005 2023-01-24
008 2018 bl uuuu u00u1 u #d
024 7 $a10.1186/s12864-017-4365-3$2DOI
100 1 $aPERIPOLLI, E.
245 $aAssessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle.$h[electronic resource]
260 $c2018
300 $a13 p.
520 $aAbstract BACKGROUND: Runs of homozygosity (ROH) are continuous homozygous segments of the DNA sequence. They have been applied to quantify individual autozygosity and used as a potential inbreeding measure in livestock species. The aim of the present study was (i) to investigate genome-wide autozygosity to identify and characterize ROH patterns in Gyr dairy cattle genome; (ii) identify ROH islands for gene content and enrichment in segments shared by more than 50% of the samples, and (iii) compare estimates of molecular inbreeding calculated from ROH (FROH), genomic relationship matrix approach (FGRM) and based on the observed versus expected number of homozygous genotypes (FHOM), and from pedigree-based coefficient (FPED). RESULTS: ROH were identified in all animals, with an average number of 55.12 ± 10.37 segments and a mean length of 3.17 Mb. Short segments (ROH1-2 Mb) were abundant through the genomes, which accounted for 60% of all segments identified, even though the proportion of the genome covered by them was relatively small. The findings obtained in this study suggest that on average 7.01% (175.28 Mb) of the genome of this population is autozygous. Overlapping ROH were evident across the genomes and 14 regions were identified with ROH frequencies exceeding 50% of the whole population. Genes associated with lactation (TRAPPC9), milk yield and composition (IRS2 and ANG), and heat adaptation (HSF1, HSPB1, and HSPE1), were identified. Inbreeding coefficients were estimated through the application of FROH, FGRM, FHOM, and FPED approaches. FPED estimates ranged from 0.00 to 0.327 and FROH from 0.001 to 0.201. Low to moderate correlations were observed between FPED-FROH and FGRM-FROH, with values ranging from -0.11 to 0.51. Low to high correlations were observed between FROH-FHOM and moderate between FPED-FHOM and FGRM-FHOM. Correlations between FROH from different lengths and FPED gradually increased with ROH length. CONCLUSIONS: Genes inside ROH islands suggest a strong selection for dairy traits and enrichment for Gyr cattle environmental adaptation. Furthermore, low FPED-FROH correlations for small segments indicate that FPED estimates are not the most suitable method to capture ancient inbreeding. The existence of a moderate correlation between larger ROH indicates that FROH can be used as an alternative to inbreeding estimates in the absence of pedigree records.
650 $aBos Indicus
653 $aDairy traits
653 $aInbreeding coefficients
653 $aROH islands
700 1 $aSTAFUZZA, N. B.
700 1 $aMUNARI, D. P.
700 1 $aLIMA, A. L. F.
700 1 $aIRGANG, R.
700 1 $aMACHADO, M. A.
700 1 $aPANETTO, J. C. do C.
700 1 $aVENTURA, R. V.
700 1 $aBALDI, F.
700 1 $aSILVA, M. V. G. B.
773 $tBMC Genomics$gv. 19, n. 34, 2018.
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Embrapa Gado de Leite (CNPGL) |
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